Study of Calpastatin Gene Polymorphism in Holstein Cattle and Buffalo

Authors

  • Soheil Yousefi Department of Animal Science, Gorgan University of Agricultural Sciences and Natural Resources, Basij Square, Gorgan, Golestan, Iran
  • Ahani Azari Mojtaba Department of Animal Science, Gorgan University of Agricultural Sciences and Natural Resources, Basij Square, Gorgan, Golestan, Iran

Keywords:

Buffalo, Calpastatin gene, Holstein cattle, Polymorphism, PCR-RFLP

Abstract

In this research for studying genetic polymorphism of calpastatin (CAST) gene as candidate gene for marker-assisted selection in different domestic livestock species, blood samples were collected from 50 Holstein cattle and 40 buffalo randomly. DNA was extracted from blood samples and a 622 bp fragment of the L region of exon and intron 1 of this gene were amplificated by polymerase chain reaction. PCR products were analyzed using restriction fragment of length polymorphism (RFLP) method and restriction reaction were done using MspI enzyme. Results indicate that there are two alleles (M and N) and three (MM, MN in Holstein cattle and MN, NN in Buffalo) genotypes for this genes. The chi-square test revealed that this locus was not at Hardy–Weinberg equilibrium in the Holstein cattle while buffalo herd showed equilibrium (P<0.05).

References

Palmer, B.R., Hickford, J.G.H, Bickerstaffe, R., A candidate gene approach to animal quality traits, Proc. NZ Society Anim Prod. 1997, 57, 294-266

Palmer, B.R., Roberts, N., Hickford, J.G., Bickerstaffe, R. Rapid communication: PCR-RFLP for MspI and NcoI in the ovine calpastatin gene, J Anim Sci., 1998, 76, 1499-1500

Bishop, M.D., Kappes, S.M., Keele, J.W., Stone, R.T., Suden, S.L., Hawkins, G.A., Toldo, S.S., Fries, R., Grosz, M.D. and Yoo, j., A genetic linkage map for cattle, Genet., 1994, 136, 619–639

Sensky, P.L., Parr, T., Bardsley, R.G., Buttery, P.J. Postmortem proteolysis in muscle and meat quality and phenotypic and genetic correlations for bovine postrigor calpastatin activity, intramuscular fat content, variable activity of the calpain proteolytic system. Meat and Livestock Commission, Loughborough, UK., 2000.

Chung, H.Y., Kim, C.D., Cho, C.Y., Yeon, S.H., Jin, H.J., Joen, K.J., Kim, H.C., Lee, H.J., Hines, H.C., Davis M.E., Effect of calpastatin gene on growth and carcass traits of Korean native cattle. Proceedings of the 7th World Congress Applied to Livestock Production., Montpellier, France., August, 2002

Byun, S.O., Zhou, H., Hickford, J.G.H., Haplotypic Diversity within the Ovine Calpastatin (CAST), Gene. Mol. Biotech., 2009.41, 133–137

Chung, H.Y., Davis, M.E., Hines, H.C., Wulf, D.M., Effect of the calpain proteolysis and calpain genotype on meat tenderness of Angus Bulls., Research and Reviews, Special Circular 1999, 170-99

Dinparast Djadid, N., Nikmard, M., Zakeri, S., Gholizadeh, S., Short Communication: Characterization of calpastatin gene in Iranian Afshari sheep, Iran J Biotech., 2011, 9(2), 145-149

Miller, S.A., Dykes, D.D., Polesky, H.F., A simple salting out procedure for extraction of DNA from human¬ nucleated cells, Nucl Acid Res, 1988, 16, 1215

Killefer, J., Koohmaraie, M., Bovine skeletal muscle calpastatin: cloning, sequence analysis and steady-state mRNA expression, J Anim Sci., 1994.72, 606-614

Yeh, F.C., Yang, R., Boyle, T.J., Ye, Z., Xiyan, J.M., POPGENE 32, Microsoft Window-based Freeware for Population Genetic Analysis, Version 1.32. Molecular Biology and Biotechnology Centre, University of Alberta: Edmonton, Canada, 2000

Tahmoorespour, M., Nassiry, M.R., Fathi Najafi, M., Ghowati, SH. Genetic polymorphism at the candidate gene in Iranian Sistani cattle (Bos indicus), Pak. J .Biol. Sci., 2007, 10(19), 3368-3373

Fakhr Kazemi, M., Nassiry, M.R., Fathi Najafi, M., Eftekhari Shahroudi, F., Khosravi, M. Investigation of Calpastatin Gene Polymorphism and its Relationship with Growth trait in Iranian Sistani Cattle, Genet., 2006, 2(3), 35-42

Eftekhari Shahroudi, F.E., Nassiry, M.R., Valizadh, R., Moussavi, A.H., Tahmoorespour, M., Ghiasi, H., Genetic polymorphism at MTR1A, CAST and CAPN loci in Iranian Karakul sheep. Iran J Biotech, 2006, 4, 117-122

Palmer, B.R., Roberts, N., Hickford, J.G., Bickerstaffe, R., Rapid communication: PCR-RFLP for MspI and NcoI in the ovine calpastatin gene, J Anim Sci., 1998, 76, 1499-1500

Nassiry, M.R., Tahmoorespur, M., Javadmanesh, A., SoltaniFar, S., Calpastatin polymorphism and its association with daily gain in Kurdi sheep, Iran J Biotech., 2006, 4(3),188-192

Nanekarani, S., Khederzadeh, S., Kaftarkari, A.M., Genotypic frequency of calpastatin gene in Atabi sheep by PBR Method, Inter. Conf. Food Engineering. Biotech, Singapoore, 2011. 9, 189-192

Mahdavi Mamaghani, A., Shodja, J., Pirani, N., Sheikhloo1, M.R., Investigation of Calpastatin Gene Polymorphism and its Relationship with Daily Gain in Iranian Ghezel Sheep, J Agric Sci. (University Of Tabriz), 2009, 18(4), 163-170

Schenkel, F.S., S.P. Miller, Z. Jiang, I.B. Mandell, H. Li, J.W. Wiltin, Association of a single nucleotide polymorphism in the calpastatin gene with carcass and meat quality traits of beef cattle, J Anim Sci., 2006, 84, 291-299

Barendse, W.J., 1999. Assessing lipid metabolism. Int. Pat. Appl. PCT/AU98/00882, Int. Pat. Publ. WO 99/23248. http://www.wipo.int/pctdb/en/wo.jsp?wo=1999023248.

Barendse, W., B.E. Harrison, R.J. Hawken, D.M. Ferguson, J.M. Thompson, M.B. Thomas, R.J. Bunch, Epistasis between calpain 1 and its inhibitor calpastatin within breeds of cattle, Genet., 2007, 176, 2601-2610

Casas, E., S.N. White, T.L. Wheeler, S.D. Shackelford, M. Koohmaraie et al., Effects of calpastatin and micro-calpain markers in beef cattle on tenderness traits, J Anim Sci, 2006, 84, 520-525

Morris, C.A., N.G. Cullen, S.M. Hickey, P.M. Dobbie, B.A. Veenvliet, T.R. Manley, Genotypic effects of calpain 1 and calpastatin on the tenderness of cooked M. longissimus dorsi steaks from Jersey and Limousin, Angus and Hereford-cross cattle, Anim Genet., 2006, 37, 411-414

Cavalho, F., Fluminhan, A., Study of the gene CAST in controlled studies of the bovine breeds: Nelore (Bos indicus), Simental (Bos taurus) and Simbrasil crossbreed. Plant, Animal and Genomes X Conference,¬ 2002, January¬12-16,¬Brazil.

Downloads

Published

2023-09-05