Descriptive analysis of somatic cell count using statistical tools

Alina Cărunta, Mihai Chiș, Daniela Elena Ilie, Kristian Miok, Radu Moleriu, Raluca Mureșan, Claudia Zaharia, Daniela Zaharie

Abstract


Somatic cell count (SCC) can be used as an indicator of subclinical mastitis and its analysis in relation with the milk composition can provide useful information on the existence of some correlations or patterns. Based on milk production data recorded during 5 years (2012-2015, 2017) at the Research and Development Station for Bovine Arad we conducted a statistical analysis aiming to identify correlations between SCC and milk characteristics (protein and fat content, lactose, nonfat solids, milk quantity, pH, casein) and to find potential profiles of SCC evolution. The correlation analysis was based on 226 lactating cows for which at least 20 measurements were available. Both classical correlation coefficient (i.e. Pearson) and correlation coefficient for repeated measurements (i.e. Bland-Altman) have been computed. In both cases, a moderate negative correlation between SCC and the lactose level has been identified while no significant correlation between SCC and the other milk characteristics has been detected. However, a more accurate description of the relation between SCC and lactose was obtained using a linear mixed model. Aiming to analyze SCC profiles, an additional attribute has been added to the data based on the following encoding rule: the attribute has value 0 if SCC is smaller than 2x105cells/ml, 1 if it is larger than 2x105cells/mL and 2 if the value is missing. In this way, data vectors containing 13 values per year have been constructed for 175 cows and a dissimilarity matrix has been constructed as a first step for cluster analysis. Overall, the results have shown that lactose and SCC were negatively correlated.

Keywords


clustering; correlation analysis; mastitis; similarity measures; somatic cell count

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References


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LUCRARI STIINTIFICE ZOOTEHNIE SI BIOTEHNOLOGII (SCIENTIFIC PAPERS ANIMAL SCIENCE AND BIOTECHNOLOGIES)

ISSN print 1841 - 9364
ISSN online 2344 - 4576
ISSN-L  1841 - 9364
(former ISSN 1221-5287, E-ISSN 1841-9364)

PUBLISHER: AGROPRINT Timisoara, Romania
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FREQUENCY: Semiannual
PUBLICATION LANGUAGE: English
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Banat´s University of Agricultural Sciences and Veterinary Medicine "King Michael I of Romania" from Timisoara
Bioengineering Faculty of Animal Resources
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